bossr

bossr consists of functions for automated segmentation of oligodendrocytes in 2D, 3D and 4D arrays. FAST model inherits the bossr with its pre-configured parameters.

Installation

To install the development version:

devtools::install_github('pennsive/bossr')

Usage

For an introduction to the bossr pipeline, check out the main article in our pkgdown site.

A companion data package, bossrdata, is available to enable users to follow along the examples in the main article. See the article for more information on how to install bossrdata.

References to the main functions can be found here.

Getting help

To get help submit an issue on the GitHub repository.

References

If you use the bossr, please cite the following papers: Bae, Eunchan, et al. “FAST: Fast, free, consistent, and unsupervised oligodendrocyte segmentation and tracking system.” eNeuro (2025).